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Hybrid Qm/Mm Simulation Of The Hydration Phenomena Of Dipalmitoylphosphatidylcholine Headgroup
Yin J(尹俊); Zhao YP(赵亚溥); Zhao YP
发表期刊Journal of Colloid and Interface Science
2009
卷号329期号:2页码:410-415
ISSN0021-9797
摘要The polar headgroup of dipalmitoylphosphatidylcholine (DPPC) molecule both in gas phase and aqueous Solution is investigated by the hybrid quantum mechanical/molecular mechanical (QM/MM) method, in which the polar head of DPPC molecule and the bound water molecules are treated with density functional theory (DFT), while the apolar hydrocarbon chain of DPPC molecule is treated with MM method. It is demonstrated that the hybrid QM/MM method is both accurate and efficient to describe the conformations of DPPC headgroup. Folded structures of headgroup are found in gas phase calculations. In this work, both monohydration and polyhydration phenomena are investigated. In monohydration, different water association sites are studied. Both the hydration energy and the quantum properties of DPPC and water molecules are calculated at the DFT level of theory after geometry optimization. The binding force of monohydration is estimated by using the scan method. In polyhydration, more extended conformations are found and hydration energies in different polyhydration styles are estimated. (C) 2008 Elsevier Inc. All rights reserved.
关键词Hydration Hybrid Qm/mm Simulation Oniom Dppc Polar Headgroup Hydrogen Bond Molecular-dynamics Simulations Phospholipid Head Groups Ab-initio Polar Head Conformational Properties Complexes Temperature Phosphate Bilayers Density
DOI10.1016/j.jcis.2008.09.070
收录类别SCI
语种英语
WOS记录号WOS:000261516200029
关键词[WOS]MOLECULAR-DYNAMICS SIMULATIONS ; PHOSPHOLIPID HEAD GROUPS ; AB-INITIO ; POLAR HEAD ; CONFORMATIONAL PROPERTIES ; COMPLEXES ; TEMPERATURE ; PHOSPHATE ; BILAYERS ; DENSITY
WOS研究方向Chemistry
WOS类目Chemistry, Physical
引用统计
被引频次:17[WOS]   [WOS记录]     [WOS相关记录]
文献类型期刊论文
条目标识符http://dspace.imech.ac.cn/handle/311007/26636
专题非线性力学国家重点实验室
通讯作者Zhao YP
推荐引用方式
GB/T 7714
Yin J,Zhao YP,Zhao YP. Hybrid Qm/Mm Simulation Of The Hydration Phenomena Of Dipalmitoylphosphatidylcholine Headgroup[J]. Journal of Colloid and Interface Science,2009,329,2,:410-415.
APA 尹俊,赵亚溥,&Zhao YP.(2009).Hybrid Qm/Mm Simulation Of The Hydration Phenomena Of Dipalmitoylphosphatidylcholine Headgroup.Journal of Colloid and Interface Science,329(2),410-415.
MLA 尹俊,et al."Hybrid Qm/Mm Simulation Of The Hydration Phenomena Of Dipalmitoylphosphatidylcholine Headgroup".Journal of Colloid and Interface Science 329.2(2009):410-415.
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