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Periodic correlation structures in bacterial and archaeal complete genomes
Wu ZB(武作兵)
Source PublicationCURRENT BIOINFORMATICS
2013-04
Volume8Issue:2Pages:267-274
ISSN1574-8936
Abstract

The periodic transference of nucleotide strings in bacterial and archaeal complete genomes is investigated by using the metric representation and the recurrence plot method. The generated periodic correlation structures exhibit four kinds of fundamental transferring characteristics: a single increasing period, several increasing periods, an increasing quasi-period and almost noincreasing period. The mechanism of the periodic transference is further analyzed by determining all long periodic nucleotide strings in the bacterial and archaeal complete genomes and is explained as follows: both the repetition of basic periodic nucleotide strings and the transference of non-periodic nucleotide strings would form the periodic correlation structures with approximately the same increasing periods.

KeywordBacterial And Archaeal Complete Genomes Periodic Correlation Structures Metric Representation Recurrence Plots Synecho Genome Mycobacterium Tuberculosis Symbolic Dynamics Organisms Nucleotide Strings
Subject Area生物力学
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Indexed BySCI
Language英语
WOS IDWOS:000320466700015
Funding OrganizationNational Science Foundation [11172310]
DepartmentLNM微纳米流体力学
Classification一类
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Cited Times:1[WOS]   [WOS Record]     [Related Records in WOS]
Document Type期刊论文
Identifierhttp://dspace.imech.ac.cn/handle/311007/46895
Collection非线性力学国家重点实验室
Corresponding AuthorWu ZB(武作兵)
Recommended Citation
GB/T 7714
Wu ZB. Periodic correlation structures in bacterial and archaeal complete genomes[J]. CURRENT BIOINFORMATICS,2013,8(2):267-274.
APA Wu ZB.(2013).Periodic correlation structures in bacterial and archaeal complete genomes.CURRENT BIOINFORMATICS,8(2),267-274.
MLA Wu ZB."Periodic correlation structures in bacterial and archaeal complete genomes".CURRENT BIOINFORMATICS 8.2(2013):267-274.
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